Juho Rousu
Department of Computer Science

Juho Rousu

Professor

Contact information

Postal address
Aalto SCI Computer Science Konemiehentie 2
Mobile phone
+358504151702
Full researcher profile
https://research.aalto.fi/...

Description

I am interested in developing principled machine learning methods, models and tools for computational and data science. My methods toolbox is primarily built on regularised learning, kernels and sparsity, as well as efficient convex/non-convex optimisation methods. My favourite topics include learning with multiple and structured targets, multiple views and ensembles. Applications of interest include metabolomics, biomedicine, pharmacology and synthetic biology.

Areas of expertise

Algorithms Metabolomics Graph and network data Structured prediction Kernel methods Machine learning

Honors and awards

Invitation or ranking in competition
Department of Computer Science
May 2016

Winner in Critical Assesment of Metabolite Identification (CASMI) contest 2016 Our team "Team Brouard" won the Category 2: Best Automatic Structural Identification - In Silico Fragmentation Only in Critical Assesment of Metabolite Identification (CASMI) contest 2016

Invitation or ranking in competition
Department of Computer Science
May 2016

Second place in Critical Assesment of Metabolite Identification (CASMI) contest 2016 Our team "Team Duehrkop" came second in the Category 2: Best Automatic Structural Identification - In Silico Fragmentation Only in Critical Assesment of Metabolite Identification (CASMI) contest 2016

Invitation or ranking in competition
Department of Computer Science
Jan 2017

Semi-Finalist in Helsinki Challenge competition Metabold team with UEF

Award or honor granted for a specific work
Department of Computer Science
Jan 2010

Best paper award, International Conference on Bioinformatics Models, Methods and Algorithms, Valencia, Spain Best paper: Intern. Conf<br/>Bioinformatics Models, Methods, Algorithms, Valencia, 2010.

Award or honor granted for a specific work
Professorship Rousu J.
May 2018

PhD thesis award Award for the Best Finnish bioinformatics Ph.D. thesis done in 2016-2017

Research groups

Professorship Rousu J., Professor
Helsinki Institute for Information Technology HIIT, Professor

Publications

Professorship Rousu J., Helsinki Institute for Information Technology HIIT, Department of Computer Science

Improved Small Molecule Identification through Learning Combinations of Kernel Regression Models

Publishing year: 2019 METABOLITES
Centre of Excellence in Molecular Systems Immunology and Physiology Research Group, SyMMys, Professorship Lähdesmäki H., Department of Computer Science, Finnish Center for Artificial Intelligence, Probabilistic Machine Learning, Helsinki Institute for Information Technology HIIT, Professorship Kaski S., Centre of Excellence in Computational Inference, COIN, Professorship Rousu J.

Bayesian metabolic flux analysis reveals intracellular flux couplings

Publishing year: 2019 Bioinformatics
Helsinki Institute for Information Technology HIIT, Professorship Rousu J., Department of Computer Science

SIRIUS 4

Publishing year: 2019 Nature Methods
Helsinki Institute for Information Technology HIIT, Professorship Rousu J., Department of Computer Science, Centre of Excellence in Computational Inference, COIN

Large-Scale Sparse Kernel Canonical Correlation Analysis

Publishing year: 2019 Proceedings of the 36th International Conference on Machine Learning
Professorship Rousu J., Helsinki Institute for Information Technology HIIT, Department of Computer Science

Liquid-chromatography retention order prediction for metabolite identification

Publishing year: 2018 Bioinformatics
Department of Computer Science, Professorship Rousu J., Helsinki Institute for Information Technology HIIT, Professorship Lähdesmäki H., Centre of Excellence in Molecular Systems Immunology and Physiology Research Group, SyMMys

Learning with multiple pairwise kernels for drug bioactivity prediction

Publishing year: 2018 Bioinformatics
Helsinki Institute for Information Technology HIIT, Department of Computer Science, Professorship Rousu J.

Analysis of fluxomic experiments with principal metabolic flux mode analysis

Publishing year: 2018 Methods in Molecular Biology
Helsinki Institute for Information Technology HIIT, Department of Computer Science, Professorship Rousu J.

Principal metabolic flux mode analysis

Publishing year: 2018 Bioinformatics
Professorship Rousu J., Helsinki Institute for Information Technology HIIT, Department of Computer Science, School services, SCI

Sparse Non-linear CCA through Hilbert-Schmidt Independence Criterion

Publishing year: 2018 2018 IEEE International Conference on Data Mining, ICDM 2018
Department of Computer Science, Professorship Rousu J., Helsinki Institute for Information Technology HIIT

Magnitude-Preserving Ranking for Structured Outputs

Publishing year: 2017 Proceedings of the Ninth Asian Conference on Machine Learning