Baran Aydogan

Contingent Worker
Contingent Worker
T314 Dept. Neuroscience and Biomedical Engineering
Full researcher profile
https://research.aalto.fi/...

Kontakuppgifter

Telefonnummer
+358505722554

Utmärkelser

MICCAI CDMRI'21 DiSCo Tractography Challenge

Invitation or ranking in competition Department of Neuroscience and Biomedical Engineering Jan 2021

Towards real-time tractography-based TMS neuronavigation

Best poster award
Award or honor granted for a specific work Department of Neuroscience and Biomedical Engineering Jan 2021

MICCAI IronTract Tractography Challenge 2020 (Round 2)

Invitation or ranking in competition Department of Neuroscience and Biomedical Engineering Jan 2020

MICCAI IronTract Tractography Challenge 2019 (Round 1)

Invitation or ranking in competition Department of Neuroscience and Biomedical Engineering Jan 2019

Diffusion MRI processing pipeline for real-time tractography-based nTMS

Best abstract selected by the audience
Award or honor granted for a specific work Department of Neuroscience and Biomedical Engineering Nov 2019

ISBI 3-D Validation of Tractography with Experimental MRI (3D VoTEM)

Winner of phantom challenge
Invitation or ranking in competition Department of Neuroscience and Biomedical Engineering Jan 2018

ISMRM Tractography-reproducibility Challenge with Empirical Data (TraCED)

Rank 2
Invitation or ranking in competition Department of Neuroscience and Biomedical Engineering Jan 2017

MICCAI Young Scientist Award

Award or honor granted for a specific work Department of Neuroscience and Biomedical Engineering Jan 2016

Publikationer

brainlife.io : a decentralized and open-source cloud platform to support neuroscience research

Soichi Hayashi, Bradley A. Caron, Anibal Sólon Heinsfeld, Sophia Vinci-Booher, Brent McPherson, Daniel N. Bullock, Giulia Bertò, Guiomar Niso, Sandra Hanekamp, Daniel Levitas, Kimberly Ray, Anne MacKenzie, Paolo Avesani, Lindsey Kitchell, Josiah K. Leong, Filipi Nascimento-Silva, Serge Koudoro, Hanna Willis, Jasleen K. Jolly, Derek Pisner, Taylor R. Zuidema, Jan W. Kurzawski, Kyriaki Mikellidou, Aurore Bussalb, Maximilien Chaumon, Nathalie George, Christopher Rorden, Conner Victory, Dheeraj Bhatia, Dogu Baran Aydogan, Fang Cheng F. Yeh, Franco Delogu, Javier Guaje, Jelle Veraart, Jeremy Fischer, Joshua Faskowitz, Ricardo Fabrega, David Hunt, Shawn McKee, Shawn T. Brown, Stephanie Heyman, Vittorio Iacovella, Amanda F. Mejia, Daniele Marinazzo, R. Cameron Craddock, Emanuale Olivetti, Jamie L. Hanson, Eleftherios Garyfallidis, Dan Stanzione, James Carson, Robert Henschel, David Y. Hancock, Craig A. Stewart, David Schnyer, Damian O. Eke, Russell A. Poldrack, Steffen Bollman, Ashley Stewart, Holly Bridge, Ilaria Sani, Winrich A. Freiwald, Aina Puce, Nicholas L. Port, Franco Pestilli 2024 Nature Methods

Why is the Winner the Best?

M. Eisenmann, A. Reinke, V. Weru, M. D. Tizabi, F. Isensee, T. J. Adler, S. Ali, V. Andrearczyk, M. Aubreville, U. Baid, S. Bakas, N. Balu, S. Bano, J. Bernal, S. Bodenstedt, A. Casella, V. Cheplygina, M. Daum, M. De Bruijne, A. Depeursinge, R. Dorent, J. Egger, D. G. Ellis, S. Engelhardt, M. Ganz, N. Ghatwary, G. Girard, P. Godau, A. Gupta, L. Hansen, K. Harada, M. Heinrich, N. Heller, A. Hering, J. Li, H. Li, J. Ma, D. Aydogan, M. Li, M. Luu, D. Owen, S. Park, H. Wang, J. Wang, L. Wang, X. Wang, J. Xie, S. Yang, Y. Yang, Z. Zhao 2023 Proceedings - 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2023

Tractography passes the test : Results from the diffusion-simulated connectivity (disco) challenge

Gabriel Girard, Jonathan Rafael-Patiño, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak, Matteo Frigo, Sara Sedlar, Samuel Deslauriers-Gauthier, Ivana Kojčić, Mauro Zucchelli, Hiba Laghrissi, Yang Ji, Rachid Deriche, Kurt G. Schilling, Bennett A. Landman, Alberto Cacciola, Gianpaolo Antonio Basile, Salvatore Bertino, Nancy Newlin, Praitayini Kanakaraj, Francois Rheault, Patryk Filipiak, Timothy M. Shepherd, Ying Chia Lin, Dimitris G. Placantonakis, Fernando E. Boada, Steven H. Baete, Erick Hernández-Gutiérrez, Alonso Ramírez-Manzanares, Ricardo Coronado-Leija, Pablo Stack-Sánchez, Luis Concha, Maxime Descoteaux, Sina Mansour L., Caio Seguin, Andrew Zalesky, Kenji Marshall, Erick J. Canales-Rodríguez, Ye Wu, Sahar Ahmad, Pew Thian Yap, Antoine Théberge, Florence Gagnon, Frédéric Massi, Elda Fischi-Gomez, Rémy Gardier, Juan Luis Villarreal Haro, Marco Pizzolato, Emmanuel Caruyer, Jean Philippe Thiran 2023 NeuroImage

Limb-specific thalamocortical tracts are impaired differently in hemiplegic and diplegic subtypes of cerebral palsy

J Jaatela, DB Aydogan, T Nurmi, J Vallinoja, H Maenpaa, H Piitulainen 2023 Cerebral Cortex

DELMEP : a deep learning algorithm for automated annotation of motor evoked potential latencies

Diego Milardovich, Victor H. Souza, Ivan Zubarev, Sergei Tugin, Jaakko O. Nieminen, Claudia Bigoni, Friedhelm C. Hummel, Juuso T. Korhonen, Dogu B. Aydogan, Pantelis Lioumis, Nima Taherinejad, Tibor Grasser, Risto J. Ilmoniemi 2023 Scientific Reports

Depression core network-based individualized targeting for transcranial magnetic stimulation

Tuukka T. Raij, Emma Komulainen, Dogu Baran Aydogan, Siina Pamilo, Erkki Isometsä, Tommi Raij 2023 Brain Stimulation

FreeSurfer 7 quality control : Key problem areas and importance of manual corrections

Vesa Vahermaa, Dogu Baran Aydogan, Tuukka Raij, Reetta-Liina Armio, Heikki Laurikainen, Jari Saramäki, Jaana Suvisaari 2023 NeuroImage

Network analysis shows decreased ipsilesional structural connectivity in glioma patients

Lucius S. Fekonja, Ziqian Wang, Alberto Cacciola, Timo Roine, D. Baran Aydogan, Darius Mewes, Sebastian Vellmer, Peter Vajkoczy, Thomas Picht 2022 Communications Biology

Identification of proprioceptive thalamocortical tracts in children: comparison of fMRI, MEG, and manual seeding of probabilistic tractography

Julia Jaatela, Dogu Baran Aydogan, Timo Nurmi, Jaakko Vallinoja, Harri Piitulainen 2022 Cerebral Cortex

Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI

Chiara Maffei, Gabriel Girard, Kurt G. Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, Achille Teillac, Steven H. Baete, Davood Karimi, Fang Cheng Yeh, Mert E. Yildiz, Ali Gholipour, Yann Bihan-Poudec, Bassem Hiba, Andrea Quattrone, Aldo Quattrone, Tommy Boshkovski, Nikola Stikov, Pew Thian Yap, Alberto de Luca, Josien Pluim, Alexander Leemans, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Bennett A. Landman, Erick J. Canales-Rodríguez, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Gaëtan Rensonnet, Simona Schiavi, Alessandro Daducci, Marco Pizzolato, Elda Fischi-Gomez, Jean Philippe Thiran, George Dai, Giorgia Grisot, Nikola Lazovski, Santi Puch, Marc Ramos, Paulo Rodrigues, Vesna Prčkovska, Robert Jones, Julia Lehman, Suzanne N. Haber 2022 NeuroImage