Juho Rousu
Institutionen för datateknik

Juho Rousu

Professor

Kontakt information

Postadress
Aalto SCI Computer Science Konemiehentie 2
Mobile phone
+358504151702
Full researcher profile
https://research.aalto.fi/...

Beskrivning

I am interested in developing principled machine learning methods, models and tools for computational and data science. My methods toolbox is primarily built on regularised learning, kernels and sparsity, as well as efficient convex/non-convex optimisation methods. My favourite topics include learning with multiple and structured targets, multiple views and ensembles. Applications of interest include metabolomics, biomedicine, pharmacology and synthetic biology.

Kompetensområden

Algorithms Metabolomics Graph and network data Structured prediction Kernel methods Machine learning

Utmärkelser

Invitation or ranking in competition
Institutionen för datateknik
May 2016

Winner in Critical Assesment of Metabolite Identification (CASMI) contest 2016 Our team "Team Brouard" won the Category 2: Best Automatic Structural Identification - In Silico Fragmentation Only in Critical Assesment of Metabolite Identification (CASMI) contest 2016

Invitation or ranking in competition
Institutionen för datateknik
May 2016

Second place in Critical Assesment of Metabolite Identification (CASMI) contest 2016 Our team "Team Duehrkop" came second in the Category 2: Best Automatic Structural Identification - In Silico Fragmentation Only in Critical Assesment of Metabolite Identification (CASMI) contest 2016

Invitation or ranking in competition
Institutionen för datateknik
Jan 2017

Semi-Finalist in Helsinki Challenge competition Metabold team with UEF

Award or honor granted for a specific work
Institutionen för datateknik
Jan 2010

Best paper award, International Conference on Bioinformatics Models, Methods and Algorithms, Valencia, Spain Best paper: Intern. Conf<br/>Bioinformatics Models, Methods, Algorithms, Valencia, 2010.

Award or honor granted for a specific work
Professorship Rousu J.
May 2018

PhD thesis award Award for the Best Finnish bioinformatics Ph.D. thesis done in 2016-2017

Forskargrupper

Professorship Rousu J., Professor
Helsinki Institute for Information Technology HIIT, Professor

Publikationer

Professorship Rousu J., Helsinki Institute for Information Technology HIIT, Institutionen för datateknik

Improved Small Molecule Identification through Learning Combinations of Kernel Regression Models

Publishing year: 2019 METABOLITES
Centre of Excellence in Molecular Systems Immunology and Physiology Research Group, SyMMys, Professorship Lähdesmäki H., Institutionen för datateknik, Finnish Center for Artificial Intelligence, Probabilistic Machine Learning, Helsinki Institute for Information Technology HIIT, Professorship Kaski S., Centre of Excellence in Computational Inference, COIN, Professorship Rousu J.

Bayesian metabolic flux analysis reveals intracellular flux couplings

Publishing year: 2019 Bioinformatics
Helsinki Institute for Information Technology HIIT, Professorship Rousu J., Institutionen för datateknik

SIRIUS 4

Publishing year: 2019 Nature Methods
Helsinki Institute for Information Technology HIIT, Professorship Rousu J., Institutionen för datateknik, Centre of Excellence in Computational Inference, COIN

Large-Scale Sparse Kernel Canonical Correlation Analysis

Publishing year: 2019 Proceedings of the 36th International Conference on Machine Learning
Professorship Rousu J., Helsinki Institute for Information Technology HIIT, Institutionen för datateknik

Liquid-chromatography retention order prediction for metabolite identification

Publishing year: 2018 Bioinformatics
Institutionen för datateknik, Professorship Rousu J., Helsinki Institute for Information Technology HIIT, Professorship Lähdesmäki H., Centre of Excellence in Molecular Systems Immunology and Physiology Research Group, SyMMys

Learning with multiple pairwise kernels for drug bioactivity prediction

Publishing year: 2018 Bioinformatics
Helsinki Institute for Information Technology HIIT, Institutionen för datateknik, Professorship Rousu J.

Analysis of fluxomic experiments with principal metabolic flux mode analysis

Publishing year: 2018 Methods in Molecular Biology
Helsinki Institute for Information Technology HIIT, Institutionen för datateknik, Professorship Rousu J.

Principal metabolic flux mode analysis

Publishing year: 2018 Bioinformatics
Professorship Lähdesmäki H., Centre of Excellence in Molecular Systems Immunology and Physiology Research Group, SyMMys, Institutionen för datateknik, Högskoleservice, Högskoleservice, Professorship Rousu J., Helsinki Institute for Information Technology HIIT

Bayesian Metabolic Flux Analysis reveals intracellular flux couplings

Publishing year: 2018 CoRR
Professorship Rousu J., Helsinki Institute for Information Technology HIIT, Institutionen för datateknik, Högskoleservice

Sparse Non-linear CCA through Hilbert-Schmidt Independence Criterion

Publishing year: 2018 2018 IEEE International Conference on Data Mining, ICDM 2018