Miia Mäkelä

Metabolic engineering reveals the relative importance of different sugar catabolic pathways during consumption of plant biomass by Aspergillus niger

Tania Chroumpi, Astrid Müller, Mao Peng, Mar Cubertorer Navarro, Robin Kuijpers, Agata Terebieniec, Jiajia Li, Lye Meng Markillie, Hugh D. Mitchell, Carrie D. Nicora, Chelsea M. Hutchinson, Vanessa Paurus, Samuel O. Purvine, Chaevien S. Clendinen, Galya Orr, Scott E. Baker, Miia R. Mäkelä, Ronald P. de Vries 2025 Current Research in Microbial Sciences

Aldo-keto reductases, short chain dehydrogenases/reductases, and zinc-binding dehydrogenases are key players in fungal carbon metabolism

Astrid Müller, Miia R. Mäkelä, Ronald P. de Vries 2025 Advances in Applied Microbiology

Exploring the complexity of xylitol production in the fungal cell factory Aspergillus niger

Astrid Müller, Jiali Meng, Robin Kuijpers, Miia R. Mäkelä, Ronald P. de Vries 2025 Enzyme and Microbial Technology

Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti

J. L. Nybo, T. C. Vesth, S. Theobald, J. C. Frisvad, T. O. Larsen, Inge Kjaerboelling, K. Rothschild-Mancinelli, E. K. Lyhne, K. Barry, A. Clum, Y. Yoshinaga, L. Ledsgaard, C. Daum, A. Lipzen, A. Kuo, R. Riley, S. Mondo, K. LaButti, S. Haridas, J. Pangalinan, A. A. Salamov, B. A. Simmons, J. K. Magnuson, J. Chen, E. Drula, B. Henrissat, A. Wiebenga, R. J.M. Lubbers, A. Müller, A. C. dos Santos Gomes, M. R. Mäkelä, J. E. Stajich, I. V. Grigoriev, U. H. Mortensen, R. P. de Vries, S. E. Baker, M. R. Andersen 2025 Studies in Mycology

L-Rhamnose Dehydrogenase LraA of Aspergillus niger Shows High Substrate Specificity Matching Its Expression Profile

Agata Terebieniec, Li Xu, Mao Peng, Miia R. Mäkelä, Ronald P. de Vries 2025 Journal of Fungi

L-Xylulose Reductase A and B from Aspergillus niger Have Distinct Biochemical Properties and Expression Profiles

Agata Terebieniec, Astrid Müller, Tania Chroumpi, Jiajia Li, Mao Peng, Miia R. Mäkelä, Ronald P. De Vries 2025 Microbial Physiology

Comparative genomics of Aspergillus nidulans and section Nidulantes

Sebastian Theobald, Tammi Vesth, Jane L. Nybo, Jens C. Frisvad, Inge Kjærbølling, Stephen Mondo, Kurt LaButti, Sajeet Haridas, Robert Riley, Alan A. Kuo, Asaf A. Salamov, Jasmyn Pangilinan, Anna Lipzen, Maxim Koriabine, Mi Yan, Kerrie Barry, Alicia Clum, Ellen K. Lyhne, Elodie Drula, Ad Wiebenga, Astrid Müller, Ronnie J.M. Lubbers, Roland S. Kun, Ana Carolina dos Santos Gomes, Miia R. Mäkelä, Bernard Henrissat, Blake A. Simmons, Jon K. Magnuson, Jakob B. Hoof, Uffe H. Mortensen, Paul S. Dyer, Michelle Momany, Thomas O. Larsen, Igor V. Grigoriev, Scott E. Baker, Ronald P. de Vries, Mikael R. Andersen 2025 Current Research in Microbial Sciences

Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi

R Baroncelli, JF Cobo-Díaz, T Benocci, E Battaglia, S Haridas, W Andreopoulos, K LaButti, J Pangilinan, A Lipzen, M Koriabine, D Bauer, G Le Floch, Miia Mäkelä, E Drula, B Henrissat, IV Grigoriev, JA Crouch, RP de Vries, SA Sukno, SA Thon 2024 GigaScience

Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes

Victor Manuel Gonzalez Ramos, Astrid Müller, Mao Peng, Megan Pawlowski, Anna Lipzen, Vivian Ng, Vasanth Singan, Mei Wang, Ronald de Vries, Igor Grigoriev, Joanna Kowalczyk, Miia Mäkelä 2024 Current Research in Biotechnology

Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation

Sebastian Theobald, Tammi C. Vesth, Elena Geib, Jane L. Nybo, Jens C. Frisvad, Thomas O. Larsen, Alan Kuo, Kurt LaButti, Ellen K. Lyhne, Inge Kjærbølling, Line Ledsgaard, Kerrie Barry, Alicia Clum, Cindy Chen, Matt Nolan, Laura Sandor, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Asaf Salamov, Robert Riley, Ad Wiebenga, Astrid Müller, Roland S. Kun, Ana Carolina dos Santos Gomes, Bernard Henrissat, Jon K. Magnuson, Blake A. Simmons, Miia R. Mäkelä, Uffe H. Mortensen, Igor V. Grigoriev, Matthias Brock, Scott E. Baker, Ronald P. de Vries, Mikael R. Andersen 2024 Journal of Fungi

Discovery of alkaline laccases from basidiomycete fungi through machine learning-based approach

Xing Wan, Sazzad Shahrear, Shea Wen Chew, Francisco Vilaplana, Miia R. Mäkelä 2024 Biotechnology for Biofuels and Bioproducts

Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi

Li Xu, Jiajia Li, Victor Manuel Gonzalez Ramos, Christina Lyra, Ad Wiebenga, Igor V. Grigoriev, Ronald P, de Vries, Miia Mäkelä, Mao Peng 2024 Bioresource Technology

Identification of an l-Arabitol Transporter from Aspergillus niger

Jiali Meng, Miia Mäkelä, Ronald de Vries 2023 Biomolecules

Genome mining reveals a surprising number of sugar reductases in Aspergillus niger

Astrid Müller, Li Xu, Claudia Heine, Tila Flach, Miia Mäkelä, Ronald P. de Vries 2023 Journal of Fungi

Lignin Degradation and Valorization by Filamentous Fungi

Miia Mäkelä, Hatice Böke, Ellisiv Nyhamar, Xing Wan 2023 Handbook of Biorefinery Research and Technology

The transcriptomic response of two basidiomycete fungi to plant biomass is modulated by temperature to a different extent

Mao Peng, Sander Bervoets, Thommas Chin-A-Woeng, Zoraide Granchi, Kristiina Hilden, Miia R. Makela, Ronald P. de Vries 2023 Microbiological Research

Detailed analysis of the D-galactose catabolic pathways in Aspergillus niger reveals complexity at both metabolic and regulatory level

Tania Chroumpi, Natalia Martínez-Reyes, Roland S. Kun, Mao Peng, Anna Lipzen, Vivian Ng, Sravanthi Tejomurthula, Yu Zhang, Igor V. Grigoriev, Miia R. Mäkelä, Ronald P. de Vries, Sandra Garrigues 2022 Fungal Genetics and Biology

The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum

Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S. Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar-Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S. Clendinen, Nikola Tolic, Igor Grigoriev, Adrian Tsang, Miia R. Mäkelä, Berend Snel, Mao Peng, Ronald P. de Vries 2022 Journal of Fungi

Comparative analysis of enzyme production patterns of lignocellulose degradation of two white rot fungi: Obba rivulosa and Gelatoporia subvermispora

Mila Marinovic, Marcos Di Falco, Maria Victoria Aguilar Pontes, Andras Gorzsas, Adrian Tsang, Ronald de Vries, Miia Mäkelä, Kristiina Hilden 2022 Biomolecules

GalR, GalX and AraR co-regulate d-galactose and l-arabinose utilization in Aspergillus nidulans

Jiali Meng, Zoltan Nemeth, Mao Peng, Erzsebet Fekete, Sandra Garrigues, Anna Lipzen, Vivian Ng, Emily Savage, Yu Zhang, Igor Grigoriev, Miia R. Mäkelä, Levente Karaffa, Ronald P. de Vries 2022 Microbial Biotechnology

Xylitol production from plant biomass by Aspergillus niger through metabolic engineering

Jiali Meng, Tania Chroumpi, Miia R. Mäkelä, Ronald P. de Vries 2022 Bioresource Technology

Fungal glycoside hydrolase family 44 xyloglucanases are restricted to the phylum Basidiomycota and show a distinct xyloglucan cleavage pattern

Peicheng Sun, Xinxin Li, Adiphol Dilokpimol, Bernard Henrissat, Ronald P. de Vries, Mirjam A. Kabel, Miia R. Mäkelä 2022 iScience

Carbohydrate esterase family 16 contains fungal hemicellulose acetyl esterases (HAEs) with varying specificity

Felipe Andrés Venegas, Sanna Koutaniemi, Sandra M.J. Langeveld, Annie Bellemare, Sun-Li Chong, Adiphol Dilokpimol, Michael J. Lowden, Kristiina Hilden, Juan Francisco Leyva-Illades, Miia Mäkelä, Thi Thanh My Pham, Mao Peng, Mark A. Hancock, Yun Zheng, Adrian Tsang, Maija Tenkanen, Justin Powlowski, Ronald de Vries 2022 New Biotechnology

Organic residues from agricultural and forest companies in Brazil as useful substrates for cultivation of the edible mushroom Pleurotus ostreatus

V. Viriato, M. R. Mäkelä, J. E. Kowalczyk, C. S. Ballarin, P. P. Loiola, M. C.N. Andrade 2022 Letters in Applied Microbiology

Re-routing of Sugar Catabolism Provides a Better Insight Into Fungal Flexibility in Using Plant Biomass-Derived Monomers as Substrates

Tania Chroumpi, Mao Peng, Lye Meng Markillie, Hugh D. Mitchell, Carrie D. Nicora, Chelsea M. Hutchinson, Vanessa Paurus, Nikola Tolic, Chaevien S. Clendinen, Galya Orr, Scott E. Baker, Miia R. Mäkelä, Ronald P. de Vries 2021 Frontiers in Bioengineering and Biotechnology

Revisiting a 'simple' fungal metabolic pathway reveals redundancy, complexity and diversity

Tania Chroumpi, Mao Peng, Maria Victoria Aguilar-Pontes, Astrid Mueller, Mei Wang, Juying Yan, Anna Lipzen, Vivian Ng, Igor V. Grigoriev, Miia R. Mäkelä, Ronald P. deVries 2021 Microbial Biotechnology

The cultivation method affects the transcriptomic response of Aspergillus niger to growth on sugar beet pulp

Sandra Garrigues, Roland Kun, Mao Peng, Birgit Gruben, Isabelle Benoit Gelber, Miia Mäkelä, Ronald de Vries 2021 Microbiology Spectrum

Production of Recombinant Laccase From Coprinopsis cinerea and Its Effect in Mediator Promoted Lignin Oxidation at Neutral pH

Jussi Kontro, Christina Lyra, Milla Koponen, Jaana Kuuskeri, Mika A. Kähkönen, Janne Wallenius, Xing Wan, Jussi Sipilä, Miia Mäkelä, Paula Nousiainen, Kristiina Hildén 2021 Frontiers in Bioengineering and Biotechnology

Application of CRISPR/Cas9 Tools for Genome Editing in the White-Rot Fungus Dichomitus squalens

Joanna E. Kowalczyk, Shreya Saha, Miia R. Mäkelä 2021 Biomolecules

Discovery and Functional Analysis of a Salicylic Acid Hydroxylase from Aspergillus niger

Ronnie J.M. Lubbers, Adiphol Dilokpimol, Jaap Visser, Kristiina S. Hildén, Miia R. Mäkelä, Ronald P. de Vries 2021 Applied and Environmental Microbiology

Molecular engineering to improve lignocellulosic biomass based applications using filamentous fungi

Jiali Meng, Miia Mäkelä, Ronald de Vries 2021 Advances in Applied Microbiology

Applications of fungal cellulases

Astrid Müller, Joanna Kowalczyk, Miia Mäkelä 2021 Encyclopedia of Mycology

Fungal lignin-modifying peroxidases and H2O2-producing enzymes

Miia Mäkelä, Kristiina Hilden, Jaana Kuuskeri 2021 Encyclopedia of Mycology

CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner

Mao Peng, Claire Khosravi, Ronnie J.M. Lubbers, Roland S. Kun, Maria Victoria Aguilar Pontes, Evy Battaglia, Cindy Chen, Sacha Dalhuijsen, Paul Daly, Anna Lipzen, Vivian Ng, Juying Yan, Mei Wang, Jaap Visser, Igor V. Grigoriev, Miia R. Mäkelä, Ronald P. de Vries 2021 The Cell Surface

Characterization of D-xylose reductase, XyrB, from Aspergillus niger  

Agata Terebienic, Tania Chroumpi, Adiphol Dilokpimol, Maria Victoria Aguilar-Pontes, Miia Mäkelä, Ronald de Vries 2021 Biotechnology Reports

Depolymerization of biorefinery lignin by improved laccases of the white-rot fungus Obba rivulosa

Janne Wallenius, Jussi Kontro, Christina Lyra, Jaana Kuuskeri, Xing Wan, Mika A. Kähkönen, Irshad Baig, Paul C.J. Kamer, Jussi Sipilä, Miia R. Mäkelä, Paula Nousiainen, Kristiina Hildén 2021 Microbial Biotechnology

Engineering of primary carbon metabolism in filamentous fungi

Tania Chroumpi, Miia Mäkelä, Ronald de Vries 2020 Biotechnology Advances

Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator

Tania Chroumpi, Maria Victoria Aguilar-Pontes, Mao Peng, Mei Wang, Anna Lipzen, Vivian Ng, Igor Grigoriev, Miia R. Makela, Ronald P. de Vries 2020 Microbiological Research

Recombinant production and characterization of six novel GH27 and GH36 alpha-galactosidases from Penicillium subrubescens and their synergism with a commercial mannanase during the hydrolysis of lignocellulosic biomass

Nancy Cononi Linares, Adiphol Dilokpimol, Henrik Stålbrand, Miia Mäkelä, Ronald de Vries 2020 Bioresource Technology

Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation

Paul Daly, Mao Peng, Hugh D. Mitchell, Young Mo Kim, Charles Ansong, Heather Brewer, Peter de Gijsel, Mary S. Lipton, Lye Meng Markillie, Carrie D. Nicora, Galya Orr, Ad Wiebenga, Kristiina S. Hildén, Mirjam A. Kabel, Scott E. Baker, Miia R. Mäkelä, Ronald P. de Vries 2020 Environmental Microbiology

Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens

Paul Daly, Mao Peng, Sara Casado López, Anna Lipzen, Vivian Ng, Vasanth Singan, Mei Wang, Igor Grigoriev, Ronald de Vries, Miia Mäkelä 2020 Journal of Biotechnology

Genomic and postgenomic diversity of fungal plant biomass degradation approaches

Ronald de Vries, Miia R. Mäkelä 2020 Trends in Microbiology

Penicillium subrubescens adapts its enzyme production to the composition of plant biomass

Adiphol Dilokpimol, Mao Peng, Marcos Di Falco, Thomas Chin A Woeng, Rosa Maria Wilhelmina Hegi, Zoraide Granchi, Adrian Tsang, Kristiina S. Hildén, Miia R. Mäkelä, Ronald P. de Vries 2020 Bioresource Technology

A comparative genomics study of 23 Aspergillus species from section Flavi

Inge Kjaerbolling, Tammi Vesth, Jens C. Frisvad, Jane L. Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen K. Lyhne, Martin E. Kogle, Ad Wiebenga, Roland S. Kun, Ronnie J. M. Lubbers, Miia R. Makela, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt LaButti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake A. Simmons, Jon K. Magnuson, Bernard Henrissat, Uffe H. Mortensen, Thomas O. Larsen, Ronald P. de Vries, Igor V. Grigoriev, Masayuki Machida, Scott E. Baker, Mikael R. Andersen 2020 Nature Communications

Applicability of Recombinant Laccases From the White-Rot Fungus Obba rivulosa for Mediator-Promoted Oxidation of Biorefinery Lignin at Low pH

Jussi Kontro, Riku Maltari, Joona Mikkilä, Mika Kähkönen, Miia R. Mäkelä, Kristiina Hildén, Paula Nousiainen, Jussi Sipilä 2020 Frontiers in Bioengineering and Biotechnology

CRISPR/Cas9 facilitates rapid generation of constitutive forms of transcription factors in Aspergillus niger through specific on-site genomic mutations resulting in increased saccharification of plant biomass

Roland S. Kun, Jiali Meng, Sonia Salazar-Cerezo, Miia R. Makela, Ronald P. de Vries, Sandra Garrigues 2020 Enzyme and Microbial Technology

Fungal Treatment Modifies Kraft Lignin for Lignin- And Cellulose-Based Carbon Fiber Precursors

Joona Mikkilä, Mikaela Trogen, Klaus A.Y. Koivu, Jussi Kontro, Jaana Kuuskeri, Riku Maltari, Zane Dekere, Marianna Kemell, Miia R. Mäkelä, Paula A. Nousiainen, Michael Hummel, Jussi Sipilä, Kristiina Hildén 2020 ACS Omega

Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus

Shingo Miyauchi, Hayat Hage, Elodie Drula, Laurence Lesage-Meessen, Jean-Guy Berrin, David Navarro, Anne Favel, Delphine Chaduli, Sacha Grisel, Mireille Haon, Francois Piumi, Anthony Levasseur, Anne Lomascolo, Steven Ahrendt, Kerrie Barry, Kurt M. LaButti, Didier Chevret, Chris Daum, Jerome Mariette, Christophe Klopp, Daniel Cullen, Ronald P. de Vries, Allen C. Gathman, Matthieu Hainaut, Bernard Henrissat, Kristiina S. Hilden, Ursula Kuees, Walt Lilly, Anna Lipzen, Miia Mäkelä, Angel T. Martinez, Melanie Morel-Rouhier, Emmanuelle Morin, Jasmyn Pangilinan, Arthur F. J. Ram, Han A. B. Woesten, Francisco J. Ruiz-Duenas, Robert Riley, Eric Record, Igor Grigoriev, Marie-Noelle Rosso 2020 DNA Research

Fungal laccases and their potential in bioremediation applications

Miia Mäkelä, Marja Tuomela, Annele Hatakka, Kristiina Hilden 2020 Laccases in Bioremediation and Waste Valorisation

Progress and Research Needs of Plant Biomass Degradation by Basidiomycete Fungi

Miia R. Mäkelä, Kristiina Hilden, Joanna E. Kowalczyk, Annele Hatakka 2020 Grand Challenges in Fungal Biotechnology

Draft genome sequences of three monokaryotic isolates of the white-rot basidiomycete fungus Dichomitus squalens

Sara Casado López, Mao Peng, Paul Daly, Bill Andreopoulos, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, Steven Ahrendt, Vivian Ng, Kerrie Barry, Chris Daum, Igor V. Grigoriev, Miia Riitta Mäkelä, Ronald P. de Vries 2019 Microbiology Resource Announcements

Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens

Paul Daly, Mao Peng, Marcos Di Falco, Anna Lipzen, Mei Wang, Vivian Ng, Igor Grigoriev, Adrian Tsang, Miia R. Makela, Ronald P. de Vries 2019 Applied and Environmental Microbiology

The white-rot basidiomycete Dichomitus squalens shows highly specific transcriptional response to lignocellulose-related aromatic compounds

Joanna Kowalczyk, Mao Peng, Megan Pawlowski, Anna Lipzen, Vivian Ng, Vasanth Singan, Mei Wang, Igor V. Grigoriev, Miia Mäkelä 2019 Frontiers in Bioengineering and Biotechnology

Developments and opportunities in fungal strain engineering for the production of novel enzymes and enzyme cocktails for plant biomass degradation

Roland Kun, Ana Carolina S. Gomes, Sari Kristiina Hilden, Sonia Salazar Cerezo, Miia Riitta Mäkelä, Ronald de Vries 2019 Biotechnology Advances

The presence of trace components significantly broadens the molecular response of Aspergillus niger to guar gum

Nancy Coconi Linares, Marcos Di Falco, Isabelle Benoit-Gelber, Birgit S. Gruben, Mao Peng, Adrian Tsang, Miia R. Mäkelä, Ronald P. de Vries 2019 New Biotechnology

A comparison between the homocyclic aromatic metabolic pathways from plant-derived compounds by bacteria and fungi

Ronnie J. M. Lubbers, Adiphol Dilokpimol, Jaap Visser, Miia R. Makela, Kristiina S. Hilden, Ronald P. de Vries 2019 Biotechnology Advances

Discovery of Novel p-Hydroxybenzoate-m-hydroxylase, Protocatechuate 3,4 Ring-Cleavage Dioxygenase, and Hydroxyquinol 1,2 Ring-Cleavage Dioxygenase from the Filamentous Fungus Aspergillus niger

Ronnie J. M. Lubbers, Adiphol Dilokpimol, Mao Peng, Jaap Visser, Miia R. Makela, Kristiina S. Hilden, Ronald P. de Vries 2019 ACS Sustainable Chemistry & Engineering

The Synthetic Potential of Fungal Feruloyl Esterases: A Correlation with Current Classification Systems and Predicted Structural Properties

Io Antonopoulou, Adiphol Dilokpimol, Laura Iancu, Miia R. Mäkelä, Simona Varriale, Gabriella Cerullo, Silvia Huttner, Stefan Uthoff, Peter Juetten, Alexander Piechot, Alexander Steinbuechel, Lisbeth Olsson, Vincenza Faraco, Kristiina S. Hilden, Ronald P. de Vries, Ulrika Rova, Paul Christakopoulos 2018 Catalysts

Dichomitus squalens partially tailors its molecular responses to the composition of solid wood

Paul Daly, Sara Casado López, Mao Peng, Christopher S. Lancefield, Samuel O. Purvine, Young Mo Kim, Erika M. Zink, Alice Dohnalkova, Vasanth R. Singan, Anna Lipzen, David Dilworth, Mei Wang, Vivian Ng, Errol Robinson, Galya Orr, Scott E. Baker, Pieter C.A. Bruijnincx, Kristiina S. Hildén, Igor V. Grigoriev, Miia R. Mäkelä, Ronald P. de Vries 2018 Environmental Microbiology

Basidiomycete Genomics

Ronald de Vries, Miia Riitta Mäkelä, Sari Kristiina Hilden, Jörg Kämper 2018 Fungal Genetics and Biology

Fungal feruloyl esterases: Functional validation of genome mining based enzyme discovery including uncharacterized subfamilies

Adiphol Dilokpimol, Miia Riitta Mäkelä, Simona Varriale, Miaomiao Zhou, Gabriella Cerullo, Loknath Gidijala, Harri Tapio Hinkka, Joana L.A. Brás, Peter Jütten, Alexander Piechot, Raymond Verhaert, Sari Kristiina Hilden, Vincenza Faraco, Ronald de Vries 2018 New Biotechnology

Fungal glucuronoyl esterases: Genome mining based enzyme discovery and biochemical characterization

Adiphol Dilokpimol, Miia R. Mäkelä, Gabriella Cerullo, Miaomiao Zhou, Simona Varriale, Loknath Gidijala, Joana L.A. Brás, Peter Jütten, Alexander Piechot, Raymond Verhaert, Vincenza Faraco, Kristiina S. Hilden, Ronald P. de Vries 2018 New Biotechnology

Role of Fungi in Wood Decay

Kristiina Hildén, Miia R. Mäkelä 2018 Reference Module in Life Sciences

Applicability of laccase mediator systems of recombinant laccase catalyzed oxidation of lignin at low pH

Jussi Heikki Samuli Kontro, Paula Annukka Nousiainen, Mika Antero Kähkönen, Uula T Hyväkkö, Joona Aleksi Mikkilä, Miia Riitta Mäkelä, Sari Kristiina Hilden, Antti Jussi Sipilä 2018

Exploring laccase mediator systems with acidic recombinant enzymes from Obba rivulosa

Jussi Heikki Samuli Kontro, Paula Annukka Nousiainen, Mika Antero Kähkönen, Joona Aleksi Mikkilä, Miia Riitta Mäkelä, Sari Kristiina Hilden, Antti Jussi Sipilä 2018

Biochemical characterization of laccases from the white-rot fungus Obba rivulosa

Mika Antero Kähkönen, Paula Annukka Nousiainen, Jussi Heikki Samuli Kontro, Mila Marinovic, Irshad Baig, Paul Kamer, Antti Jussi Sipilä, Miia Riitta Mäkelä, Sari Kristiina Hilden 2018

Induction of Genes Encoding Plant Cell Wall-Degrading Carbohydrate-Active Enzymes by Lignocellulose-Derived Monosaccharides and Cellobiose in the White-Rot Fungus Dichomitus squalens

Sara Casado Lopez, Mao Peng, Tedros Yonatan Issak, Paul Daly, Ronald P. de Vries, Miia R. Mäkelä 2018 Applied and Environmental Microbiology

Puunlahottajat

Taina Lundell, Miia Mäkelä 2018 Sienten biologia

Temporal transcriptome analysis of the white-rot fungus Obba rivulosa shows expression of a constitutive set of plant cell wall degradation targeted genes during growth on solid spruce wood

Mila Marinovic, Maria Victoria Aguilar-Pontes, Miaomiao Zhou, Otto Kullervo Miettinen, Ronald de Vries, Miia Riitta Mäkelä, Sari Kristiina Hilden 2018 Fungal Genetics and Biology

Selective Cleavage of Lignin β- O-4 Aryl Ether Bond by β-Etherase of the White-Rot Fungus Dichomitus squalens

Mila Marinović, Paula Nousiainen, Adiphol Dilokpimol, Jussi Kontro, Robin Moore, Jussi Sipilä, Ronald P. De Vries, Miia R. Mäkelä, Kristiina Hildén 2018 ACS Sustainable Chemistry & Engineering

Search for production of high-quality lignin from technical lignins by enzymatic catalysis

Joona Aleksi Mikkilä, Jaana Tuulia Kuuskeri, Miia Riitta Mäkelä, Zane Dekere, Jussi Heikki Samuli Kontro, Paula Annukka Nousiainen, Antti Jussi Sipilä, Sari Kristiina Hilden 2018

Characterization of a feruloyl esterase from Aspergillus terreus facilitates the division of fungal enzymes from Carbohydrate Esterase family 1 of the carbohydrate-active enzymes (CAZy) database

Miia R. Mäkelä, Adiphol Dilokpimol, Salla M. Koskela, Jaana Kuuskeri, Ronald P. de Vries, Kristiina Hilden 2018 Microbial Biotechnology

Draft genome sequence of the basidiomycete white-rot fungus Phlebia centrifuga

Miia Riitta Mäkelä, Mao Peng, Zoraide Granchi, Thomas Chin-A-Woeng, Rosa Hegi, Sake van Pelt, Steven Ahrendt, Robert Riley, Matthieu Heinaut, Bernard Henrissat, Igor Grigoriev, Ronald de Vries, Sari Kristiina Hilden 2018 Genome Announcements

Efficient extraction method for high quality fungal RNA from complex lignocellulosic substrates

Miia Riitta Mäkelä, Sari Kristiina Hilden 2018 Fungal Genomics

Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli

Miia Riitta Mäkelä, M. Di Falco, E. McDonnell, T.T.M. Nguyen, A. Wiebenga, Sari Kristiina Hilden, M. Peng, I.V. Grigoriev, A. Tsang, R.P. de Vries 2018 Studies in Mycology

The fungus Aspergillus niger consumes sugars in a sequential manner that is not mediated by the carbon catabolite repressor CreA

Miia R. Mäkelä, Maria Victoria Aguilar-Pontes, Diana van Rossen-Uffink, Mao Peng, Ronald P. de Vries 2018 Scientific Reports

Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes

Mao Peng, Maria Victoria Aguilar-Pontes, Matthieu Hainaut, Bernard Henrissat, Kristiina Hilden, Miia R. Mäkelä, Ronald P. de Vries 2018 Fungal Genetics and Biology

In Silico Analysis of Putative Sugar Transporter Genes in Aspergillus niger Using Phylogeny and Comparative Transcriptomics

Mao Peng, Maria V. Aguilar-Pontes, Ronald P. de Vries, Miia R. Mäkelä 2018 Frontiers in Microbiology

The physiology of Agaricus bisporus in semi-commercial compost cultivation appears to be highly conserved among unrelated isolates

María Victoria Aguilar Pontes, Aleksandrina Patyshakuliyeva, Harm Post, Edita Jurak, Kristiina Hildén, Maarten Altelaar, Albert Heck, Mirjam A. Kabel, Ronald P. de Vries, Miia R. Mäkelä 2018 Fungal Genetics and Biology

Genomic and genetic insights into a cosmopolitan fungus, Paecilomyces variotii (Eurotiales)

Andrew Urquhart, Stephen Mondo, Miia Riitta Mäkelä, James Hane, Ad Wiebenga, Guifen He, Sirma Mihaltcheva, Jasmyn Pangilinan, Anna Lipzen, Kerrie Barry, Ronald de Vries, Igor V. Grigoriev, Alexander Idnurm 2018 Frontiers in Microbiology

Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

Tammi C. Vesth, Jane L. Nybo, Sebastian Theobald, Jens C. Frisvad, Thomas O. Larsen, Kristian F. Nielsen, Jakob B. Hoof, Julian Brandl, Asaf Salamov, Robert Riley, John M. Gladden, Pallavi Phatale, Morten T. Nielsen, Ellen K. Lyhne, Martin E. Kogle, Kimchi Strasser, Erin McDonnell, Kerrie Barry, Alicia Clum, Cindy Chen, Kurt LaButti, Sajeet Haridas, Matt Nolan, Laura Sandor, Alan Kuo, Anna Lipzen, Matthieu Hainaut, Elodie Drula, Adrian Tsang, Jon K. Magnuson, Bernard Henrissat, Ad Wiebenga, Blake A. Simmons, Miia R. Mäkelä, Ronald P. de Vries, Igor V. Grigoriev, Uffe H. Mortensen, Scott E. Baker, Mikael R. Andersen 2018 Nature Genetics

Genetic transformation of the white-rot fungus Dichomitus squalens using a new commercial protoplasting cocktail

Paul Daly, Gillian G. Slaghek, Sara Casado Lopez, Ad Wiebenga, Kristiina S. Hilden, Ronald P. de Vries, Miia R. Mäkelä 2017 Journal of Microbiological Methods

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Ronald P. de Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar-Osorio, Sotiris Amillis, Christiane Akemi Uchima, Gregor Anderluh, Mojtaba Asadollahi, Marion Askin, Kerrie Barry, Evy Battaglia, Özgür Bayram, Tiziano Benocci, Susanna A. Braus-Stromeyer, Camila Caldana, David Cánovas, Gustavo C. Cerqueira, Fusheng Chen, Wanping Chen, Cindy Choi, Alicia Clum, Renato Augusto Corrêa dos Santos, André Ricardo de Lima Damásio, George Diallinas, Tamás Emri, Erzsébet Fekete, Michel Flipphi, Susanne Freyberg, Antonia Gallo, Christos Gournas, Rob Habgood, Matthieu Hainaut, María Laura Harispe, Bernard Henrissat, Sari Kristiina Hilden, Ryan Hope, Abeer Hossain, Eugenia Karabika, Levente Karaffa, Zsolt Karányi, Nada Kraševec, Alan Kuo, Harald Kusch, Kurt LaButti, Ellen L. Lagendijk, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Anna Lipzen, Antonio F. Logrieco, Andrew MacCabe, Miia Riitta Mäkelä, Iran Malavazi, Petter Melin, Vera Meyer, Natalia Mielnichuk, Márton Miskei, Ákos P. Molnár, Giuseppina Mulé, Chew Yee Ngan, Margarita Orejas, Erzsébet Orosz, Jean Paul Ouedraogo, Karin M. Overkamp, Hee-Soo Park, Giancarlo Perrone, Francois Piumi, Peter J. Punt, Arthur F. J. Ram, Ana Ramón, Stefan Rauscher, Eric Record, Diego Mauricio Riaño-Pachón, Vincent Robert, Julian Röhrig, Roberto Ruller, Asaf Salamov, Nadhira S. Salih, Rob A. Samson, Erzsébet Sándor, Manuel Sanguinetti, Tabea Schütze, Kristina Sepčić, Ekaterina Shelest, Gavin Sherlock, Vicky Sophianopoulou, Fabio M. Squina, Hui Sun, Antonia Susca, Richard B. Todd, Adrian Tsang, Shiela E. Unkles, Nathalie van de Wiele, Diana van Rossen-Uffink, Juliana Velasco de Castro Oliveira, Tammi C. Vesth, Jaap Visser, Jae-Hyuk Yu, Miaomiao Zhou, Mikael R. Andersen, David B. Archer, Scott E. Baker, Isabelle Benoit, Axel A. Brakhage, Gerhard H. Braus, Reinhard Fischer, Jens C. Frisvad, Gustavo H. Goldman, Jos Houbraken, Berl Oakley, István Pócsi, Claudio Scazzocchio, Bernhard Seiboth, Patricia A. vanKuyk, Jennifer Wortman, Paul S. Dyer, Igor V. Grigoriev 2017 Genome Biology

Expanding the feruloyl esterase gene family of Aspergillus niger by characterization of a feruloyl esterase, FaeC

Adiphol Dilokpimol, Miia R. Mäkelä, Sadegh Mansouri, Olga Belova, Martin Waterstraat, Mirko Bunzel, Ronald P. de Vries, Kristiina S. Hilden 2017 New Biotechnology

Genome sequence of the basidiomycete white-rot fungus Trametes pubescens

Zoraide Granchi, Mao Peng, Thomas Chi-A-Woeng, Ronald P. de Vries, Kristiina Hilden, Miia Riitta Mäkelä 2017 Genome Announcements

Expression-based clustering of CAZyme-encoding genes of Aspergillus niger

Birgit S. Gruben, Miia R. Mäkelä, Joanna E. Kowalczyk, Miaomiao Zhou, Isabelle Benoit-Gelber, Ronald P. De Vries 2017 BMC Genomics

Occurrence and function of enzymes for lignocellulose degradation in commercial Agaricus bisporus cultivation

Mirjam A. Kabel, Edita Jurak, Miia R. Mäkelä, Ronald P. De Vries 2017 Applied Microbiology & Biotechnology

Functional diversity in Dichomitus squalens monokaryons

Sara Casado López, Bart Theelen, Serena Manserra, Tedros Yonatan Issak, Johanna Rytioja, Miia R. Mäkelä, Ronald P. De Vries 2017 IMA Fungus

Cultivation of Podospora anserina on soybean hulls results in an efficient enzyme cocktail for plant biomass hydrolysis

Miia R. Mäkelä, Ourdia Bouzid, Diogo Robl, Harm Post, Mao Peng, Albert Heck, Maarten Altelaar, Ronald P. de Vries 2017 New Biotechnology

The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi

Mao Peng, Adiphol Dilokpimol, Miia R. Mäkelä, Kristiina Hildén, Sander Bervoets, Robert Riley, Igor V. Grigoriev, Matthieu Hainaut, Bernard Henrissat, Ronald P. de Vries, Zoraide Granchi 2017 Journal of Biotechnology

The molecular response of the white-rot fungus Dichomitus squalens to wood and non-woody biomass as examined by transcriptome and exoproteome analyses

Johanna Rytioja, Kristiina Hildén, Marcos Di Falco, Miaomiao Zhou, Maria Victoria Aguilar-Pontes, Outi Maaria Sietiö, Adrian Tsang, Ronald P. de Vries, Miia R. Mäkelä 2017 Environmental Microbiology

Homologous and heterologous expression of basidiomycete genes related to plant biomass degradation

Sara Casado López, Outi-Maaria Sietiö, Sari Kristiina Hilden, Ronald de Vries, Miia Riitta Mäkelä 2016 Gene expression systems in fungi: advancements and applications

Fungal degradation of plant oligo- and polysaccharides

Ronald P. de Vries, Joost van den Brink, Kristiina S. Hilden, Miia R. Mäkelä, Henrik Stålbrand 2016 Handbook of Carbohydrate-Modifying Biocatalysts

How (post-)genomic insights can provide new leads for improvements of mushroom cultivation

Ronald P. de Vries, Aleksandrina Patyshakuliyeva, Harm Post, Miaomiao Zhou, Edita Jurak, Albert Heck, Sari Kristiina Hilden, Mirjam Kabel, Miia Riitta Mäkelä, Maarten Altelaar 2016 Science and Cultivation of Edible Fungi

Diversity of fungal feruloyl esterases: updated phylogenetic classification, properties, and industrial applications

Adiphol Dilokpimol, Miia Riitta Mäkelä, Maria Victoria Aguilar-Pontes, Isabelle Benoit-Gelber, Sari Kristiina Hilden, Ronald de Vries 2016 Biotechnology for Biofuels

Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2

Otto Miettinen, Robert Riley, Kerrie Barry, Dan Cullen, Ronald P. de Vries, Matthieu Hainaut, Annele Hatakka, Bernard Henrissat, Kristiina Hildén, Rita Kuo, Kurt LaButti, Anna Lipzen, Miia R. Mäkelä, Laura Sandor, Joseph W. Spatafora, Igor V. Grigoriev, David S. Hibbett 2016 Genome Announcements

Fungal ligninolytic enzymes and their applications

Miia Riitta Mäkelä, EL Bredeweg, JK Magnuson, SE Baker, Ronald de Vries, Sari Kristiina Hilden 2016 Microbiology Spectrum

Penicillium subrubescens is a promising alternative for Aspergillus niger in enzymatic plant biomass saccharification

Miia R. Mäkelä, Sadegh Mansouri, Ad Wiebenga, Johanna Rytioja, Ronald P. de Vries, Kristiina S. Hildén 2016 NEW BIOTECHNOLOGY

Production of feruloyl esterases by Aspergillus species

Miia Riitta Mäkelä, Luis Alexis Jimenez Barboza, Ronald de Vries, Sari Kristiina Hilden 2016 Aspergillus and Penicillium in the post-genomic era

Closely related fungi employ diverse enzymatic strategies to degrade plant biomass

Isabelle Benoit, Helena Culleton, Miaomiao Zhou, Marcos DiFalco, Guillermo Aguilar-Osorio, Evy Battaglia, Ourdia Bouzid, Carlo P.J.M. Brouwer, Hala B.O. El-Bushari, Pedro M. Coutinho, Birgit S. Gruben, Kristiina S. Hildén, Jos Houbraken, Luis Alexis Jiménez Barboza, Anthony Levasseur, Eline Majoor, Miia R. Mäkelä, Hari Mander Narang, Blanca Trejo-Aguilar, Joost Van Den Brink, Patricia A. VanKuyk, Ad Wiebenga, Vincent McKie, Barry McCleary, Adrian Tsang, Bernard Henrissat, Ronald P. De Vries 2015 Biotechnology for Biofuels

Lignocellulose-converting enzyme activity profiles correlate with molecular systematics and phylogeny grouping in the incoherent genus Phlebia (Polyporales, Basidiomycota)

Jaana Tuulia Kuuskeri, Miia Riitta Mäkelä, Jarkko Mikael Isotalo, Ilona Maria Oksanen, Taina Kristina Lundell 2015 BMC Microbiology

Fungal colonisation and moisture uptake of torrefied wood, charcoal, and thermally treated pellets during storage

Maija Kymäläinen, Miia Mäkelä, Kristiina Hildén, Jussi Kukkonen 2015 European Journal of Wood and Wood Products

Development of the Nordic Bioeconomy : NMC reporting: Test centers for green energy solutions - Biorefineries and business needs

Lene Lange, Bryndís Björnsdóttir, Asbjorn Brandt, Sari Kristiina Hilden, Gudmundur Óli Hreggvidsson, Birgitte Jacobsen, Amialie Jessen, Eva Nordberg Karlsson, Jane Lindedam, Miia Riitta Mäkelä, Sigrún Elsa Smáradóttir, Janus Vang, Alexander Wentzel 2015

Aromatic metabolism of filamentous fungi in relation to the presence of aromatic compounds in plant biomass

Miia R. Mäkelä, Mila Marinović, Paula Nousiainen, April J.M. Liwanag, Isabelle Benoit, Jussi Sipilä, Annele Hatakka, Ronald P. de Vries, Kristiina S. Hildén 2015 Advances in Applied Microbiology

Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle

Aleksandrina Patyshakuliyeva, Harm Post, Miaomiao Zhou, Edita Jurak, Albert J R Heck, Kristiina S. Hildén, Mirjam A. Kabel, Miia R. Mäkelä, Maarten A F Altelaar, Ronald P. De Vries 2015 Environmental Microbiology

Saccharification of lignocelluloses by carbohydrate active enzymes of the white rot fungus Dichomitus squalens

Johanna Rytioja, Kristiina Hildén, Susanna Mäkinen, Jari Vehmaanperä, Annele Hatakka, Miia R. Mäkelä 2015 PloS One

Biochemical characterization of recombinant oxalate decarboxylases of the white rot fungus Dichomitus squalens

Outi-Maaria Sietiö, Miia Riitta Mäkelä, Sari Kristiina Hilden 2015 Current Biotechnology

Biochemical and molecular characterization of an atypical manganese peroxidase of the litter-decomposing fungus Agrocybe praecox

Kristiina Hilden, Miia Mäkelä, Kari Steffen, Martin Hofrichter, Annele Hatakka, David Archer, Taina Lundell 2014 Fungal Genetics and Biology

Genomics, Lifestyles and Future Prospects of Wood-Decay and Litter-Decomposing Basidiomycota

Taina K. Lundell, Miia R. Mäkelä, Ronald P. de Vries, Kristiina S. Hilden 2014 Advances in Botanical Research

Oxalate-Metabolising Genes of the White-Rot Fungus Dichomitus squalens Are Differentially Induced on Wood and at High Proton Concentration

Miia R. Makela, Outi-Maaria Sietiö, Ronald P. de Vries, Sari Timonen, Kristiina Hilden 2014 PloS One

Degradation and Modification of Plant Biomass by Fungi

Miia Mäkelä, Kristiina Hilden, Ronald de Vries 2014 Fungal genomics

Editorial: Plant biomass degradation by fungi

Miia Riitta Mäkelä, Nicole Donofrio, Ronald de Vries 2014 Fungal Genetics and Biology

Plant biomass degradation by fungi

Miia Mäkelä, Nicole Donofrio, Ronald de Vries 2014 Fungal Genetics and Biology

An improved and reproducible protocol for the extraction of high quality fungal RNA from plant biomass substrates

Aleksandrina Patyshakuliyeva, Miia Mäkelä, Outi-Maaria Sietiö, Ronald de Vries, Kristiina Hilden 2014 Fungal Genetics and Biology

Plant-polysaccharide-degrading enzymes from basidiomycetes

Johanna Rytioja, Kristiina Hildén, Jennifer Yuzon, Annele Hatakka, Ronald P. De Vries, Miia R. Mäkelä 2014 Microbiology and Molecular Biology Reviews

Transcriptional analysis of selected cellulose-acting enzymes encoding genes of the white-rot fungus Dichomitus squalens on spruce wood and microcrystalline cellulose

Johanna Rytioja, Kristiina Hildén, Annele Hatakka, Miia R. Mäkelä 2014 Fungal Genetics and Biology

Mitochondrial Genome of Phlebia radiata Is the Second Largest (156 kbp) among Fungi and Features Signs of Genome Flexibility and Recent Recombination Events

Heikki Salavirta, Ilona Oksanen, Jaana Kuuskeri, Miia Makela, Pia Laine, Lars Paulin, Taina Lundell 2014 PloS One

Carbohydrate-Binding Modules of Fungal Cellulases: Occurrence in Nature, Function, and Relevance in Industrial Biomass Conversion

Aniko Varnai, Miia R. Mäkelä, Demi T. Djajadi, Jenni Rahikainen, Annele Hatakka, Liisa Viikari 2014 Advances in Applied Microbiology

Agaricus bisporus and related Agaricus species on lignocellulose: Production of manganese peroxidase and multicopper oxidases

Kristiina Hilden, Miia Mäkelä, Pauliina Lankinen, Taina Lundell 2013 Fungal Genetics and Biology

Heterologous expression and structural characterization of two low pH laccases from a biopulping white-rot fungus Physisporinus rivulosus

Kristiina Hilden, Miia Mäkelä, Taina Lundell, Jaana Tuulia Kuuskeri, Alexey Chernykh, Ludmila Golovleva, David Archer, Annele Hatakka 2013 Applied Microbiology & Biotechnology

Effect of copper, nutrient nitrogen, and wood-supplement on the production of lignin-modifying enzymes by the white-rot fungus Phlebia radiata

Miia Mäkelä, Taina Lundell, Annele Hatakka, Kristiina Hilden 2013 Fungal Biology

Phenolic mediators boost manganese and versatile peroxidase catalyzed oxidation of lignocellulosic materials

Paula Annukka Nousiainen, Jussi Kontro, Helmiina Manner, Johanna Rytioja, Miia Mäkelä, Pekka Maijala, Taina Lundell, Annele Hatakka, Jussi Sipilä 2013

Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus

Aleksandrina Patyshakuliyeva, Edita Jurak, Annegret Kohler, Adam Baker, Evy Battaglia, Wouter De Bruijn, Kerry S. Burton, Michael P. Challen, Pedro M. Coutinho, Daniel C. Eastwood, Birgit S. Gruben, Miia R. Mäkelä, Francis Martin, Marina Nadal, Joost van den Brink, Ad Wiebenga, Miaomiao Zhou, Bernard Henrissat, Mirjam Kabel, Harry Gruppen, Ronald P. De Vries 2013 BMC Genomics

Phenolic mediators enhance the manganese peroxidase catalyzed oxidation of recalcitrant lignin model compounds

Paula Annukka Nousiainen, Jussi Heikki Samuli Kontro, Maija Helmiina Manner, Miia Riitta Mäkelä, Sari Kristiina Hilden, Pekka Mikael Maijala, Taina Kristina Lundell, Annele Inkeri Hatakka, Antti Jussi Sipilä 2012 OxiZymes 16.-19.9. 2012, proceedings book p. 123. Poster

The potential of phenolic mediators on manganese peroxidase catalyzed oxidation of lignocellulosic materials

Paula Annukka Nousiainen, Jussi Kontro, Helmiina Manner, Miia Mäkelä, Kristiina Hilden, Pekka Maijala, Taina Lundell, Annele Hatakka, Jussi Sipilä 2012 EWLP 2012

Laccases from the white rot fungi Physisporinus rivulosus and Phlebia radiata: molecular characterization of thermotolerant oxidoreductases and reactions with mediator compounds

Kristiina Hilden, Taina Lundell, Miia Mäkelä, Johanna Rytioja, Paula Annukka Nousiainen, Jussi Sipilä, A Chernykh, L Golovleva, D Archer, Annele Hatakka 2010 1st Symposium on Biotechnology Applied to Lignocelluloses, Lignobiotech One

Molecular characterisation of thermotolerant laccases from the biopulping fungus Physisporinus rivulosus

Kristiina Hilden, Taina Lundell, Miia Mäkelä, Johanna Rytioja, Paula Annukka Nousiainen, Jussi Sipilä, D Archer, A Chernykh, L Golovleva, Annele Hatakka 2010 Oxidative enzymes as sustainable industrial biocatalysts (OESIB)

Lignin-modifying enzymes in filamentous basidiomycetes - ecological, functional and phylogenetic review

Taina K. Lundell, Miia R. Makela, Kristiina Hilden 2010 Journal of Basic Microbiology

Oxalate decarboxylase: biotechnological update and prevalence of the enzyme in filamentous fungi

Miia Riitta Mäkelä, Kristiina Hilden, Taina K. Lundell 2010 Applied Microbiology & Biotechnology

Oxalate decarboxylase of the white-rot fungus Dichomitus squalens demonstrates a novel enzyme primary structure and non-induced expression on wood and in liquid cultures

Miia R. Makela, Kristiina Hilden, Annele Hatakka, Taina K. Lundell 2009 Microbiology

The white-rot fungi Phlebia radiata and Dichomitus squalens in wood-based cultures: expression of laccases, lignin peroxidases, and oxalate decarboxylase

Miia Riitta Mäkelä 2009

Expression on wood, molecular cloning and characterization of three lignin peroxidase (LiP) encoding genes of the white rot fungus Phlebia radiata

Kristiina Hilden, Miia R Mäkelä, Terhi K Hakala, Annele Hatakka, Taina Lundell 2006 Current Genetics

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