Abdulmelik Nesru Mohammed

T313 Dept. Computer Science

I am a postdoctoral researcher at Aalto University School of Science, working under Professor Pekka Orponen in the Natural Computation Group. I am interested in algorithms, combinatorics, topology and their applications. My present focus is on the application of topological graph-theoretic techniques for the design of self-assembled nucleic acid nanostructures.

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Best Paper Award, UCNC 2018

Award or honor granted for a specific work Professorship Orponen P. Jun 2018


Algorithmic Design of 3D Wireframe RNA Polyhedra

Antti Elonen, Ashwin Karthick Natarajan, Ibuki Kawamata, Lukas Oesinghaus, Abdulmelik Mohammed, Jani Seitsonen, Yuki Suzuki, Friedrich C. Simmel, Anton Kuzyk, Pekka Orponen 2022 ACS Nano

Effects of design choices on the stiffness of wireframe DNA origami structures

Erik Benson, Abdulmelik Mohammed, Daniel Rayneau-Kirkhope, Andreas Gådin, Pekka Orponen, Björn Högberg 2018 ACS Nano

Algorithmic design of cotranscriptionally folding 2D RNA origami structures

Abdulmelik Mohammed, Pekka Orponen, Sachith Pai 2018 Unconventional Computation and Natural Computation

Computational modelling of the kinetic Tile Assembly Model using a rule-based approach

Abdulmelik Mohammed, Elena Czeizler, Eugen Czeizler 2017 Theoretical Computer Science

Unknotted strand routings of triangulated meshes

Abdulmelik Mohammed, Mustafa Hajij 2017 DNA Computing and Molecular Programming

Computer-aided production of scaffolded DNA nanostructures from flat sheet meshes

Erik Benson, Abdulmelik Mohammed, Alessandro Bosco, Ana I. Teixeira, Pekka Orponen, Björn Högberg 2016 Angewandte Chemie

DNA rendering of polyhedral meshes at the nanoscale

Erik Benson, Abdulmelik Mohammed, Johan Gardell, Sergej Masich, Eugen Czeizler, Pekka Orponen, Björn Högberg 2015 Nature

Rule-based modelling as a platform for the analysis of synthetic self-assembled nano-systems

Abdulmelik Mohammed, Eugen Czeizler 2013 Proceedings Fourth International Workshop on Computational Models for Cell Processes (Turku, Finland, June 2013)

Computational Modelling of the kinetic Tile Assembly Model using a rule-based approach

Abdulmelik Mohammed, Daniel Pletea, Eugen Czeizler 2012 DNA Computing and Molecular Programming - 18th International Conference, Aarhus, Denmark, August 14-17, 2012