Anna Cichonska
Visitor
Visitor
T313 Dept. Computer Science
Full researcher profile
https://research.aalto.fi/...
Contact information
Email
[email protected]
Honors and awards
PhD thesis Award
PhD thesis Award for best thesis in Bioinformatics 2018-2019
Award or honor granted for a specific work
Department of Computer Science
May 2020
Publications
Crowdsourced mapping of unexplored target space of kinase inhibitors
Anna Cichońska, Balaguru Ravikumar, Robert J. Allaway, Fangping Wan, Sungjoon Park, Olexandr Isayev, Shuya Li, Michael Mason, Andrew Lamb, Ziaurrehman Tanoli, Minji Jeon, Sunkyu Kim, Mariya Popova, Stephen Capuzzi, Jianyang Zeng, Kristen Dang, Gregory Koytiger, Jaewoo Kang, Carrow I. Wells, Timothy M. Willson, Tudor I. Oprea, Avner Schlessinger, David H. Drewry, Gustavo Stolovitzky, Krister Wennerberg, Justin Guinney, Tero Aittokallio
2021
Nature Communications
An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease
Sanni E. Ruotsalainen, Juulia J. Partanen, Anna Cichonska, Jake Lin, Christian Benner, Ida Surakka, Aarno Palotie, Mark Daly, Howard Jacob, Athena Matakidou, Heiko Runz, Sally John, Robert Plenge, Mark McCarthy, Julie Hunkapiller, Meg Ehm, Dawn Waterworth, Caroline Fox, Anders Malarstig, Kathy Klinger, Kathy Call, Tomi Mäkelä, Jaakko Kaprio, Petri Virolainen, Kari Pulkki, Terhi Kilpi, Markus Perola, Jukka Partanen, Anne Pitkäranta, Riitta Kaarteenaho, Seppo Vainio, Kimmo Savinainen, Veli Matti Kosma, Urho Kujala, Outi Tuovila, Minna Hendolin, Raimo Pakkanen, Jeff Waring, Bridget Riley-Gillis, Jukka Peltola, Veikko Salomaa, Lauri Aaltonen, Ying Wu, Aki Havulinna, Pietro Della Briotta Parolo, Miika Koskinen, Aki Havulinna, Tuomo Kiiskinen, Jukka Partanen, Matti Pirinen
2021
European journal of human genetics
Modeling drug combination effects via latent tensor reconstruction
Tianduanyi Wang, Sandor Szedmak, Haishan Wang, Tero Aittokallio, Tapio Pahikkala, Anna Cichonska, Juho Rousu
2021
Bioinformatics
Leveraging multi-way interactions for systematic prediction of pre-clinical drug combination effects
Heli Julkunen, Anna Cichonska, Prson Gautam, Sandor Szedmak, Jane Douat, Tapio Pahikkala, Tero Aittokallio, Juho Rousu
2020
Nature Communications
A Solution for Large Scale Nonlinear Regression with High Rank and Degree at Constant Memory Complexity via Latent Tensor Reconstruction
Sandor Szedmak, Anna Cichonska, Heli Julkunen, Tapio Pahikkala, Juho Rousu
2020
arXiv.org
Learning with multiple pairwise kernels for drug bioactivity prediction
Anna Cichonska, Tapio Pahikkala, Sandor Szedmak, Heli Julkunen, Antti Airola, Markus Heinonen, Tero Aittokallio, Juho Rousu
2018
Bioinformatics
Machine Learning for Systems Pharmacology
Anna Cichońska
2018
Computational-experimental approach to drug-target interaction mapping
Anna Cichonska, Balaguru Ravikumar, Elina Parri, Sanna Timonen, Tapio Pahikkala, Antti Airola, Krister Wennerberg, Juho Rousu, Tero Aittokallio
2017
PLoS computational biology
metaCCA
Anna Cichonska, Juho Rousu, Pekka Marttinen, Antti J. Kangas, Pasi Soininen, Terho Lehtimaki, Olli Raitakari, Marjo-Riitta Jarvelin, Veikko Salomaa, Mika Ala-Korpela, Samuli Ripatti, Matti Pirinen
2016
Bioinformatics
Profiling persistent tubercule bacilli from patient sputa during therapy predicts early drug efficacy
Isobella Honeyborne, Timothy D. McHugh, Iitu Kuittinen, Anna Cichonska, Dimitrios Evangelopoulos, Katharina Ronacher, Paul D. van Helden, Stephen H. Gillespie, Delmiro Fernandez-Reyes, Gerhard Walzl, Juho Rousu, Philip D. Butcher, Simon J. Waddell
2016
BMC MEDICINE